15 Options
The following options can be set:
- reportRmd.digits, default is 2. Sets the default number of digits in output functions. Does not affect p-values.
- reportRmd.forceWald, default is FALSE. If set to TRUE then Wald CI, as opposed to likelihood profile CI will be used in the rm_uvsum function.
- reportRmd.logScale, default is TRUE. The scale of the forest plots will default to log unless otherwise specified.
Example:
rm_uvsum(response = 'baseline_ctdna',
covs=c('age','sex','l_size','pdl1','tmb'),
data=pembrolizumab)| Estimate(95%CI) | p-value | N | |
|---|---|---|---|
| age | 0.82 (-10.13, 11.76) | 0.88 | 94 |
| sex | 0.69 | 94 | |
| Female | Reference | 58 | |
| Male | 56.61 (-228.71, 341.93) | 36 | |
| l size | 1.21 (-1.12, 3.54) | 0.31 | 94 |
| pdl1 | -3.50 (-8.27, 1.27) | 0.15 | 93 |
| tmb | 18.78 (-125.18, 162.74) | 0.80 | 94 |
options('reportRmd.digits'=1)
rm_uvsum(response = 'baseline_ctdna',
covs=c('age','sex','l_size','pdl1','tmb'),
data=pembrolizumab)| Estimate(95%CI) | p-value | N | |
|---|---|---|---|
| age | 0.8 (-10.1, 11.8) | 0.88 | 94 |
| sex | 0.69 | 94 | |
| Female | Reference | 58 | |
| Male | 56.6 (-228.7, 341.9) | 36 | |
| l size | 1.2 (-1.1, 3.5) | 0.31 | 94 |
| pdl1 | -3.5 (-8.3, 1.3) | 0.15 | 93 |
| tmb | 18.8 (-125.2, 162.7) | 0.80 | 94 |