reportRmd
PMH Biostatistics
1
Overview
2
Summary statistics
2.1
Summaries By Group
2.2
Showing Statistical Tests
2.3
Including Effect Sizes
2.4
Parametric vs Non-parametric Comparisons
2.5
Row vs Column Summaries
3
Compact summary statistics
3.1
Summaries By Group
3.2
Showing Statistical Tests
3.3
Including Effect Sizes
3.4
Using Mean Summary Statistic Instead of Median
3.5
Custom Digits Argument
3.6
Row vs Column Summaries
3.7
Viewing the Self-Generated Description
4
Univariate regression
4.1
Simple Linear Regression
4.2
Logistic Regression
4.3
Poisson Regression
4.4
Negative Binomial Regression
4.5
Survival Analysis
4.6
Competing Risk
4.7
GEE Models
4.8
Returning Model Objects
4.9
Adjusting p-values
5
Multivariable analysis
6
Combining univariate and multivariable models
7
Changing the output
8
Combining tables
9
Simple Survival Summaries
10
Survival Times in Long Format
10.1
Survival Times With Covariate Adjustments
11
Stratified Survival Summary
12
Working with Labels
12.1
Worked Example
12.1.1
set_labels
12.1.2
set_var_labels
12.1.3
extract_labels
12.1.4
replace_plot_labels
12.1.5
clear_labels
13
Plotting Functions
13.1
Plotting bivariate relationships
13.2
Plotting survival curves
13.3
Forest Plots
13.4
Combining univariable and multivariable models into a single plot
14
Miscellaneous Functions
14.1
excelCol
14.2
excelColLetters
15
Options
16
PDF Output
17
Data Sets
17.1
pembrolizumab
17.2
ctDNA
reportRmd Package
17
Data Sets