BiostatsUHNplus
Biostatistics@UHN
1
Overview
2
Exploratory analysis
2.1
Summary of high protein status
2.1.1
By data record (row):
2.1.2
By cow in yard at observation instance:
2.2
Nested summary of high protein status
2.2.1
By cow:
2.2.2
By cow nested in yard:
2.3
Nested summary of yard
2.3.1
By cow:
2.4
Nested summary of diet
2.4.1
By cow:
3
Inferential analysis
3.1
Kaplan-Meier survival curve
3.2
Logistic model
3.3
Generalized estimating equations model
3.4
Bayesian hierarchical model
3.4.1
Variance piechart
3.4.2
Caterpillar plot for random effect of cow
3.4.3
Caterpillar plot for random effect of yard
4
BiostatsUHNplus
4.1
Installation
4.2
Documentation
4.3
Examples
4.3.1
A wrapper for the as.numeric function. Prints entries that fail to parse instead of throwing uninformative error
4.3.2
Nested summary of adverse events by participant in cohort, stratified by attribution to first study drug
4.3.3
Outputs three DSMB-CCRU AE summary tables in Excel format per UHN template
4.3.4
Related adverse event onset timeline plots
4.3.5
Summary functions for MCMCglmm object with binary outcome
Example nested summary and Bayesian hierarchical model summary
3
Inferential analysis